I should have phrased my previous comment better. The sentiment I was trying to express was that if the PhD is composed of published material, the structure and minor details matter slightly less. The examiners during your viva will consider that your work has already been successfully peer reviewed and be less inclined to reject you over minor issues. I was not suggesting PhD by publication but suggesting that you should be confident in your own decisions. So if you think that your published work validates your framework, the examiners will unlikely to unreasonably reject it.