If you think you're writing is good, then its probably the same as my sup. In which case, just take the changes with a pinch of salt i.e. its not 'bad' writing, its just them being overly picky. My supervisor tells me all the time "the thing about you Sneaks is that you're writing is excellent/you're very good at writing/you can write, others can't" etc etc. but doesn't stop her changing it all!
I wouldn't overly worry. And if you are concerned handing your thesis in with their changes, then you might have to address it - my sup only changes publication work. Maybe ask them to confirm you can hand it in with their changes.