It should be perfectly fine to present your third year project instead of your 4th year if it is more relevant. The interviewers probably don't care what you present as long as long as you present it well and it somehow relevant to doing a PhD or your project.
Saying that, you might want to quickly mention that your 4th year project was highly technical focusing on..... and that you gained skills in these areas.... Just so that it doesn't look like you are not hiding anything and that it just wasn't research focused.
Goodluck!